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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa006877 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 27469 Da PI: 8.4748 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7e-18 | 103 | 157 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee+F+ + ++ +++++LA+ l+L rqV vWFqNrRa+ k Lsa006877 103 RKKLRLTKAQSGLLEEAFKLHTSLNPQQKQKLARDLKLRPRQVEVWFQNRRARTK 157 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 115.1 | 4.3e-37 | 103 | 192 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q+ lLEe F+ ++ L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL++ev+eL+++ Lsa006877 103 RKKLRLTKAQSGLLEEAFKLHTSLNPQQKQKLARDLKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCKRLTDENQRLRQEVHELKTQ 192 69*************************************************************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-16 | 87 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.552 | 99 | 159 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 101 | 168 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.6E-14 | 101 | 163 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.00E-13 | 103 | 160 | No hit | No description |
Pfam | PF00046 | 2.3E-15 | 103 | 157 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 134 | 157 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.1E-21 | 159 | 202 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.5E-9 | 159 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGFHGFAKAE LVLELGLNSS SMAENTTKPT KKPYLSFDHP LEPSLSLALS GDSYGGAGGG 60 SSFSNASVKR ERDVASEESE RVGAINTCGE DGEEDEDGSV NGRKKLRLTK AQSGLLEEAF 120 KLHTSLNPQQ KQKLARDLKL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKK CCKRLTDENQ 180 RLRQEVHELK TQKLLQPIYM QMPAATLTMC PSCEQNGDTN PASKNIPFTM APKRDFFSPY 240 SSSSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 159 | RRARTKLKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271511.2 | 3e-88 | PREDICTED: homeobox-leucine zipper protein HAT22 isoform X2 | ||||
Refseq | XP_011073661.1 | 8e-89 | PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X2 | ||||
Swissprot | P46604 | 1e-75 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | Q39927 | 1e-116 | Q39927_HELAN; Homeodomain protein | ||||
STRING | VIT_00s0732g00010.t01 | 9e-88 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-64 | HD-ZIP family protein |