PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006877

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HD-ZIP

Protein Properties

Length: 247aa MW: 27469 Da PI: 8.4748

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58679240	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7e-18	103	157	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee+F+ + ++ +++++LA+ l+L rqV vWFqNrRa+ k Lsa006877 103 RKKLRLTKAQSGLLEEAFKLHTSLNPQQKQKLARDLKLRPRQVEVWFQNRRARTK 157 678899***********************************************98 PP
2	HD-ZIP_I/II	115.1	4.3e-37	103	192	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q+ lLEe F+ ++ L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL++ev+eL+++ Lsa006877 103 RKKLRLTKAQSGLLEEAFKLHTSLNPQQKQKLARDLKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCKRLTDENQRLRQEVHELKTQ 192 69*************************************************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-16	87	160	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	99	159	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-17	101	168	IPR009057	Homeodomain-like
SMART	SM00389	3.6E-14	101	163	IPR001356	Homeobox domain
CDD	cd00086	1.00E-13	103	160	No hit	No description
Pfam	PF00046	2.3E-15	103	157	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	134	157	IPR017970	Homeobox, conserved site
SMART	SM00340	5.1E-21	159	202	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	3.5E-9	159	192	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGFHGFAKAE LVLELGLNSS SMAENTTKPT KKPYLSFDHP LEPSLSLALS GDSYGGAGGG 60 SSFSNASVKR ERDVASEESE RVGAINTCGE DGEEDEDGSV NGRKKLRLTK AQSGLLEEAF 120 KLHTSLNPQQ KQKLARDLKL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKK CCKRLTDENQ 180 RLRQEVHELK TQKLLQPIYM QMPAATLTMC PSCEQNGDTN PASKNIPFTM APKRDFFSPY 240 SSSSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	159	RRARTKLKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002271511.2	3e-88	PREDICTED: homeobox-leucine zipper protein HAT22 isoform X2
Refseq	XP_011073661.1	8e-89	PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X2
Swissprot	P46604	1e-75	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	Q39927	1e-116	Q39927_HELAN; Homeodomain protein
STRING	VIT_00s0732g00010.t01	9e-88	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-64	HD-ZIP family protein